Networks

We introduce a novel combinatorial method, cd-CAP, for simultaneous detection of connected subnetworks of an interaction network where genes exhibit conserved alteration patterns across tumor samples.

Often bioinformaticians are interested to visualize if there is any kind of relation between the Modules. This problem can be modeled as the conversion of two-mode network (bipartite graph) to one-mode network of Modules and visualize the resulting one-mode network. Here, I attempt to demonstrate how this can be achieved using R.